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AtT-20 cell line expression data
dataset
posted on 2022-11-10, 22:06 authored by Marina Junqueira SantiagoMarina Junqueira Santiago, Mark ConnorMark ConnorResults of transcript sequencing for AtT-20FlpIn cells. mRNA was isolated from AtT-20FlpIn cells using standard procedures, next generation sequencing was performed by Macrogen (https://dna.macrogen.com/). A report ourtlining the workflow and data analysis methods is available from the Authors by request.
Deposited data is in an Excel file, which includes the gene symbol, transcript ID from the reference mouse genome, protein ID and transcript abundance. The AtT-20FlpIn cells were generated by Dr Santiago, and have been used as the 'wild type' cells for generating cell lines stably expressing GPCR and ion channels for most of the molecular pharmacology projects in the Molecular Pharmacodynamics group.
History
Research Project URL
Research Project ID
136675712Q/A Log
- Institutional review completed
FAIR Self Assessment Summary
This text has been generated from a tool that has been adapted from the ARDC FAIR Assessment Tool Findable -------- Does the dataset have any identifiers assigned? Global Is the dataset identifier included in all metadata records/files describing the data? Yes How is the data described with metadata? Comprehensively (see suggestion) using a recognised formal machine-readable metadata schema What type of repository or registry is the metadata record in? Data is in one place but discoverable through several registries Accessible ---------- How accessible is the data? Publicly accessible Is the data available online without requiring specialised protocols or tools once access has been approved? Standard web service API (e.g. OGC) Will the metadata record be available even if the data is no longer available? Yes Interoperable ------------- What (file) format(s) is the data available in? Mostly in a proprietary format What best describes the types of vocabularies/ontologies/tagging schemas used to define the data elements? No standards have been applied in the description of data elements How is the metadata linked to other data and metadata (to enhance context and clearly indicate relationships)? There are no links to other metadata Reusable -------- Which of the following best describes the license/usage rights attached to the data? Standard machine-readable license (e.g. Creative Commons) How much provenance information has been captured to facilitate data reuse? Fully recorded in a machine-readable formatFAIR Self Assessment Rating
- 4 Stars
Data Sensitivity
- General
